![]() ![]() The Wright–Fisher model of populations is one of the oldest models utilized in population genetic theory. More supporting documentation and tutorials can be found under ‘resources’ at. Poppr is open source and major releases are available on CRAN. #GENODIVE FOR GENOMIC DATA WINDOWS MANUAL#A manual with documentation and examples is provided. While functions for genotypic diversity and clone censoring are specific for clonal populations, several functions found in poppr are also valuable to analysis of any populations. New functions include calculation of Bruvo’s distance for microsatellites, batch-analysis of the index of association with several indices of genotypic diversity, and graphing including dendrograms with bootstrap support and minimum spanning networks. Data can be imported from several formats including GenAlEx formatted text files and can be analyzed on a user-defined hierarchy that includes unlimited levels of subpopulation structure and clone censoring. Currently, poppr can be used for dominant/codominant and haploid/diploid genetic data. We developed the R package poppr providing unique tools for analysis of data from admixed, clonal, mixed, and/or sexual populations. Furthermore, few tools exist that are specifically designed for analyzing data from clonal populations, making analysis difficult and haphazard. Many microbial, fungal, or oomcyete populations violate assumptions for population genetic analysis because these populations are clonal, admixed, partially clonal, and/or sexual. ![]()
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